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About Me

As a bioinformatician, one of my guiding questions is, "How can I use my knowledge of biological research and software development for the good of humanity?"

This question leads me to the following topics that I am very passionate about:

  • Thinking in systems, both biological networks and software architecture.
  • Designing automated solutions for and with human beings.
  • Access to and transparency of knowledge as embodied by, for example, the open science movement or the Open Knowledge Foundation and Wikipedia to name but a few.

Contact

You can also find me on the following platforms:

Moritz E. Beber's Projects

altair icon altair

Declarative statistical visualization library for Python

altair_saver icon altair_saver

Altair extension for saving charts in a variety of formats.

bicbpy icon bicbpy

Bioinformatics and Computational Biology with Python

biom-format icon biom-format

The Biological Observation Matrix (BIOM) Format Project

biopython icon biopython

Official git repository for Biopython (converted from CVS)

black-presentation icon black-presentation

A short presentation on formatting with Black for the PyData Meetup Copenhagen.

bofdat icon bofdat

Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data

codecov-demo icon codecov-demo

Demonstrate a working codecov.io report on a repository

combine2020-equilibrator icon combine2020-equilibrator

An interactive tutorial on using eQuilibrator for including thermodynamic information in metabolic modeling. Prepared for COMBINE2020.

conda-base icon conda-base

Provide Docker images with different Python versions in the conda base environment.

conda-mnx icon conda-mnx

A Docker image that contains a conda environment with all of the mnx command line tools installed.

cookiecutter-data-science icon cookiecutter-data-science

A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.

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