Comments (5)
The program appears to be dying inside the CUDA runtime. Very puzzling indeed.
For a quick check, make a subset with very few particles (let say 1000) and try the followings:
- Run as usual (to make sure the problem is reproducible with fewer particles)
- Run without MPI (e.g. 1 process, 16 threads)
- Run without CUDA
- Run without MPI and CUDA
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Thanks for testing. This indicates that the problem is really with CUDA.
If you can share this small subset privately to us, we will investigate further.
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Please make the test case as small as possible. Make a new directory and copy minimum required files (STAR file, particles, mask, reference etc) and make sure the problem can be reproduced there. Compress the folder and upload it to Google Drive or Drop Box and send the link to Takanori Nakane, whose email address can be found in the CCPEM mailing list. Don't forget to write the full command line to reproduce the issue.
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Related Issues (20)
- Installation issue HOT 12
- relion 5 tomo error HOT 1
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- [RELION5 --TOMO] 'IndexError: list index out of range' while importing mdoc HOT 4
- RELION 5.0 no coordinates tab HOT 1
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- Use of Relion Logo in supplemental figure in scientific paper
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- Does RELION 5.0 support the GCTF library? HOT 1
- Relion 5.0 Aretomo not working HOT 2
- DynaMight optimize deformations - training exceeds specified number of epochs
- Error with relion5 using 2D classification on aws g6 instances HOT 1
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