Comments (4)
Please respect our issue template. What version of the CUDA SDK and the C++ compiler are you using?
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Sorry. I should have reported them.
gcc (GCC) 4.8.5 20150623 (Red Hat 4.8.5-44)
cuda/cuda_10.2.89_440.33.01_linux/bin/nvcc
cudnn/cudnn-10.2-linux-x64-v7.6.5.32
NVIDIA GeForce 2080Ti
I was compiling Relion5-beta on the head node:
Linux login01 3.10.0-1160.114.2.el7.x86_64 #1 SMP Wed Mar 20 15:54:52 UTC 2024 x86_64 x86_64 x86_64 GNU/Linux
Are they too old?
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Are they too old?
Yes. Please read our installation manual.
C++ compiler:
RELION 5.0 requires a C++ compiler that fully supports the C++14 standard. For GCC, this means version 5.0 or later. Note that GCC 4.8, which comes with RedHat Enterprise Linux / Cent OS 7.x, is too old.
https://relion.readthedocs.io/en/latest/Installation.html#installation
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Thanks!
I have missed that part for sure.
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Related Issues (20)
- corrupted size vs. prev_size
- Error in running blush regularisation in 3D classification HOT 1
- cannot import data with symbolic links HOT 1
- Import successfull but resulting star file contains only single movie for all tiit angles HOT 3
- Relion tomo segmentation fault in Refine3D
- Relion5 Ctf estimation: BUG: MDin should contain a rlnMicrographPreExposure label HOT 4
- AreTomo alignment and tomogram reconstruction faulty HOT 2
- RELION tomogram reconstruction fails (or produces weird contrast) when carbon is in images HOT 1
- In 3D classification, iteration 1 densities are scaled by normcorrection
- Relion Job struck at - Relion MPI Setup - for multinode jobs HOT 2
- relion_particle_subtract resets rlnGroupNumber in (optional) --data star file but uses rlnGroupScaleCorrection from optimiser star.
- Wrong reconstruction using Reconstruct tomograms (Discrepancy with AreTomo)
- relion_run_motioncorr --use_own --only_do_unfinished runs on all files (not just unfinished) HOT 12
- AreTomo Relion5.0 Wrapper fails HOT 2
- ERROR: tomogramTable for Position_44 does not contain a rlnTomoMicrographNameEven label HOT 1
- semop lock error during 3D classification HOT 8
- Conda "defaults" channel should be removed from environment.yml HOT 3
- unexpectedly small, yet non-zero sigma2 value when using --always_cc HOT 3
- Miniforge installation for multiple user environment HOT 2
- Segmentation fault: address not mapped to object at address 0x80
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