Comments (6)
Hmm. Good question. We are not maintaining the conda version actually. I'm guessing that there were problems related to dependency versions. But I'm not sure. Which dependency are you having an issue with?
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All three ;)
In my experience numpy and scipy restrictions are not necessary, however, I do understand the one for pandas.
But: your last commit message for requirements.txt is numpy scipy pandas version restriction removed
. So I think there used to be these restrictions but the bioconda bot is not removing them and updates only the release.
I can remove these restrictions on bioconda, if you like.
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I see. I can remove the <=
restrictions for numpy and scipy and release a new version. It looks like Bioconda creates a new version automatically for every updates?
from hic2cool.
No need for this, just a new build on bioconda. I request your review already.
bioconda/bioconda-recipes#22132
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ok I approved the changes, but I'm not 100% sure whether it would still work. Can you let me know? I will try to loosen the criteria and do tests later.
from hic2cool.
Thanks for approving, I will let you know if sth is not working.
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Related Issues (20)
- juicer hic (fragment level matrix) convert into cooler HOT 2
- Hic2cool convert error HOT 2
- faster conversion? HOT 3
- Error -3 while decompressing data HOT 7
- Update requirements to allow newer versions HOT 5
- zlib.error when converting hic to cool HOT 3
- Calling Cooler.pixels raises KeyError: 'nnz' if multiple processes specified in hic2cool convert HOT 2
- hic2cool command not found on zsh HOT 3
- Multiprocessing Error HOT 1
- Encoding problem while converting a Juicer matrix? HOT 6
- ValueError when converting hic file to cool file HOT 1
- h5py 3 requires mode argument
- hic2cooler not working with hic v9 formatting from Juicer v2 HOT 1
- New .hic format HOT 1
- error: object header message is too large HOT 1
- HOW to get cool files only with KR normalization
- No weight column in the converted .mcool file HOT 1
- hic2cool update is not compatible with write permissions on h5py 3.6.9
- How to specify multiple resolutions in the output file of mcool
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