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alphafold

Open source code for AlphaFold.

astrowind_florianwuennemann

⭕️ Personal webpage for Florian Wuennemann based on the Astrowind template

austin-pussers

Repository for setting up Rshiny hub

awair_open_data

Repository of air quality data from Awair devices

background_subtraction

Background subtraction for COMET platform

bentobox

bigscale2

Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data

bioconda-recipes

Conda recipes for the bioconda channel.

bioconda.github.io

Bioconda is a distribution of bioinformatics software realized as a channel for the versatile package manager Conda.

bioconda_recipepod

Repository containing gitpod configuration for creating and testing bioconda recipes.

boms

cajal

A Python package using Gromov-Wasserstein distance to compare cell shapes

cellranger

10x Genomics Single Cell 3' Gene Expression and VDJ Assembly

cellsighter

cmplot

📊 Circular and Rectangular Manhattan Plot

codiga_team

Test repository for a Codiga team

container-galaxy-sc-tertiary

Galaxy container for single cell RNA-Seq tertiary analysis tools

containers

Bioinformatics containers

cropseq.analysis

dca

Deep count autoencoder for denoising scRNA-seq data

deepcell-applications

Run DeepCell Applications

doubletfinder

R package for detecting doublets in single-cell RNA sequencing data

dropbead

dropseq_scripts

All Scripts and tools used to analyze Dropseq single cell data.

dummy_mcmicro

emt_dynamics

Scripts used for "Comparing transcriptional dynamics of the epithelial-mesenchymal transition"

example-streamlit

Example of using MultiQC within a Streamlit app

explore_mcmicro

Small shiny app to explore the output and QC parameters from MCMICRO runs.

fairmot

A simple baseline for one-shot multi-object tracking

florianwuennemann_cv

Up to date CV compiled with the R vitae package