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4c-workflow

Generalized Snakemake workflow for R.4Cker

a_little_book_of_python_for_multivariate_analysis

A Little Book of Python for Multivariate Analysis

acgt_pipelines

Pipelines for ACGT Bioinformatics Analysis

apl

apol1_scrnaseq_paper

This folder contains the markdown file used to perform the analysis displayed in the paper.

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

biotools

A list of useful bioinformatics resources

coding-interview-university

A complete computer science study plan to become a software engineer.

crisprd_tiling_assay

Tiling Assay used to delete all lncRNA sites without flanking any protein coding genes.

data-science-in-tidyverse

Data Science in the tidyverse, a two-day workshop @ rstudio:conf(2018)

developer-roadmap

Roadmap to becoming a web developer in 2018

emacs24-starter-kit

A cleaner version of the literate starter kit based on Emacs24

flaskr-tdd

Flaskr: Intro to Flask, Test Driven Development (TDD), and jQuery

guardant_health

GATK_Pipeline

hubward

Manage the visualization of large amounts of other people's [often messy] genomics data

igv

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

lcdb-wf

streamlined version of lcdb-workflows

lcdb_website

mediciprime.github.io

mit-deep-learning-book-pdf

MIT Deep Learning Book in PDF format (complete and parts) by Ian Goodfellow, Yoshua Bengio and Aaron Courville

pgrnadesign

pindel

Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.

pivot

Platform for Interactive analysis and Visualization Of Transcriptomics data

repository-images

Images for README.md are located here

rush

A cross-platform command-line tool for executing jobs in parallel

single-cell-rna-seq

A single cell RNA-seq workflow following http://dx.doi.org/10.12688/f1000research.9501.2

ssrna-seq

Pipelines for single cell RNA-seq

tcga_pipeline

The Cancer Genome Atlas Pipeline

tdd

tempus_challenge