Moritz E. Beber's Projects
Organisation of the 2019 unconference
Declarative statistical visualization library for Python
Altair extension for saving charts in a variety of formats.
Course project for udemy.com: Angular 5 - The Complete Guide.
Manage an ipyparallel cluster on AWS EC2.
Experimentation with adding a Bearer authentication handler to Python's urllib requests.
Bioinformatics and Computational Biology with Python
Conda recipes for the bioconda channel.
The Biological Observation Matrix (BIOM) Format Project
Official git repository for Biopython (converted from CVS)
A short presentation on formatting with Black for the PyData Meetup Copenhagen.
Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
Fast NumPy array functions written in Cython
Classes to parse the BRENDA database.
Demonstrate testing on a simple calculator
supplementary tables and files
Demonstrate a working codecov.io report on a repository
An interactive tutorial on using eQuilibrator for including thermodynamic information in metabolic modeling. Prepared for COMBINE2020.
supplemental information for our community standards manuscript
Standard reaction Gibbs energy estimation for biochemical reactions
Provide Docker images with different Python versions in the conda base environment.
Documentation for conda-forge
A Docker image that contains a conda environment with all of the mnx command line tools installed.
Post-process conifer output for downstream statistical analysis.
A Docker image for the conifer utility.
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.
A cookiecutter template for creating nextflow plugins.