shotgunosine Goto Github PK

1806

18.06 course at MIT

abcd-dicom2bids

For selectively downloading ABCD data QC'ed as good by the DAIC, converting it to BIDS standard input data, selecting the best pair of spin echo field maps, and correcting the sidecar JSON files to meet BIDS Validator spec.

abcdqc_batchserver

afni

Official AFNI source and documentation

afni_add_rcran_ubuntu

afni_colorbar_proposal

Quick demo of a proposed enhancement for colorbars to work with AFNI's alpha-boxed color maps.

afni_proc

bids-specification

Brain Imaging Data Structure (BIDS) Specification

bids-statsmodels-design-synthesizer

This is a prototype to explore the possibility of creating self-contained tool to perform the data aggregation necessary to jump from events.tsv files/model.json/other time series metadata to a design matrix (or an appropriate sparse precursor of the design matrix).

bids2nda

A conversion tool for creating NDA compatible metadata representation from BIDS datasets.

bids_stb

biocloudsearch

Finding and streaming data from cloud-based repositories of biomedical data

brainbox

BrainBox is a web application that let's you annotate and segment 3D brain imaging data in real time, collaboratively.

cbcl_aff_validation

Code for the manuscript on validation of CBCL-Aff on three datasets (ABCD, HBN, BHRC)

cifti-connectivity

Script to generate correlation matrices from BOLD dense or parcellated time series data.

coco2019-unifize_and_skullstrip

Simple workflows for demonstrating

coco2019_workflow_example

coders_forum

A repo to document the tutorials/rants/discussions/musings at the coder's forum

cogmood_backend

Tools for serving and storing data from online experiments.

compare_matrices_to_assign_networks

cookiecutter-packaging

A cookiecutter template to go along with Contemporary Python Packaging gists

dask_sklearn_breaking

Minimal example of breaking dask parallel backend failing with nested cross validation

data-reliability-stability

Calculations for reliability and stability over three data sets

datalad-docker

Recipe for a small Docker image with git-annex and datalad

emolabel

epe

Data and code for Emotion Prediction Errors

extensions_talk

fitlins

Fit Linear Models to BIDS Datasets

fmriprep

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

fmriprep_qa_guide

Rough draft of a guide for reviewing fmriprep's QA outputs