Name: Yojana Gadiya
Type: User
Company: Fraunhofer ITMP | Enveda Biosciences
Bio: Data Scientist / Bioinformatician / Computational Biologist I / Chemoinformatician
Location: Hamburg, Germany
Blog: www.linkedin.com/in/yojana-gadiya-477739113
Yojana Gadiya's Projects
Analyses conducted on HemeMap.
TensorFlow code and pre-trained models for BERT
BERT CRF model for Name Entity Recognition in pytorch
This repo contains a PyTorch implementation of a BiLSTM-CRF model for named entity recognition task.
BioBERT: a pre-trained biomedical language representation model
brat rapid annotation tool (brat) - for all your textual annotation needs
containerised brat (http://brat.nlplab.org/)
Write reproducible code for getting and processing ChEMBL
ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission
repository for Publicly Available Clinical BERT Embeddings
Curation of Neurodegeneration in BEL (CONIB)
The Curation of Neurodegeneration Supporting Ontology (CONSO)
Scripts and data from "Towards a global investigation of transcriptomic signatures through co-expression networks and pathway knowledge for the identification of disease mechanisms"
Guidelines and procedures for curation (manual and semi-automated)
FAIR Dataset Maturity model
Ex Solutions for Data mining class
User-friendly extensions of the DrugBank database
Implementation of Baseline model for PICO 2018 dataset https://github.com/bepnye/EBM-NLP/
Github repo for the Experimental Factor Ontology (EFO)
:house_with_garden: Fast & easy transfer learning for NLP. Harvesting language models for the industry.
Modeling heme pathogenicity and pathway dysregulation in the context of hemolytic disorders
A java project for classification of biomedical images
Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript
Contains codes for assignment given in LSI tutuorial
Lab course for Mechanism enrichment of NeuroMMSig
This is the original dataset for ALTA-NICTA Challenge