Alex Bartlett's Projects
Selected code from a pipeline I wrote for analyzing NGS data from screens using pooled CRISPR guides. The parts I have included here are the master Snakefile, the Python wrapper script that wrangles the Snakefile's arguments and starts the pipeline, and an R script I created for generating input files for one of the steps of the pipeline.
An assignment I completed as part of of one of the classes in my bioinformatics master's program. The assignment was to design and implement algorithms to solve the longest common subsequence problem.
An assignment I completed as part of one of the classes in my bioinformatics master's program. The assignment was to read in a specifically formatted input file of matrices, perform two different matrix multiplication algorithms, output the product matrix, and compare the efficiencies of the algorithms.
A two-part programming assignment I completed
Another programming assignment I completed