A. Darius L.'s Projects
Converts an internal feature format representation to GFF3
A (quite messy but usable) Perl program to infer gene and its subfeatures on a (longer, not sure with shorter) suspected corresponding gene sequence in a new, but almost identical genome. Uses NCBI BLAST+ whenever possible.
A boilerplate for the freeCodeCamp curriculum.
learning bootstrap4
A set of (meant to be interactive) shell scripts (and maybe in the future, C or other programs), to backup files in the server root directory and database dumps, related to the operation of the trio Drupal-Chado-Tripal as seen in http://gmod.org/wiki/Tripal_Tutorial_(v1.0)
A set of files for HTTP Basic logout mechanism. Specifically designed for the internal project I am working on with my company but you can easily customize it to suit your needs.
Variant Calling Pipeline, just another one.
This is a program to map variances that were retrieved on a created, mostly similar genome, to the origin/base genome. Takes in variances (SNPs and INDELs only for now) in VCF format, gets its nearby X sequences to the left and right and these are BLAST-ed into the original genome. Best hit is selcted and the sequence is reduced again to to infer the location in new genome.
coursera guide
Just a lot of how to's in the Philippines
Range Validator sample
Just a repository for tracking version changes for recruitment exam of synacy.com for position "enior Software Engineer with Perl experience (distributed team)"
Automatically exported from code.google.com/p/the-uplb-express-ticketing-system
Test Repository of Agri Data (TReAD) - A prototype management & storage system for agricultural research survey data. Produced as part of recruitment process by the International Rice Research Institue (IRRI).
VCF TO GFF3 Converter | Sharing this since I haven't found one that works for me. This one (https://gist.github.com/danwiththeplan/3989411) didn't. I think there's one for iplant but it's not public.
XSPF Creator for Linux
A set of scripts to gather data from //github.com/edgedalmacio/phisix