adamd3 Goto Github PK

adamd3.github.io

Repository for my personal site

admin-dashboard

An admin dashboard design

bactmap

A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

bactseq

A nextflow pipeline for performing bacterial RNA-Seq data analysis.

bam_to_redpop

Takes BAM files as input and returns RedPop results.

calculator

An online calculator built using HTML, CSS and JS.

cf-express

A web app for exploring gene expression data from Cystic Fibrosis patients

cf_varsity

Code used for analysis of Cystic Fibrosis Varsity project data

codondiffr

Inter-taxon comparison of codon usage

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

etch-a-sketch

fastbook

The fastai book, published as Jupyter Notebooks

genereggnn

Derive gene regulatory interactions from transcriptomics data via graph neural networks

library

A book library written in Javascript

ml-templates

Templates for Python.

odin-recipes

A basic static site containing a few of my favourite recipes

orthoquant

A Nextflow pipeline for performing bacterial RNA-Seq analysis without a reference genome.

pvclust

An R package for hierarchical clustering with p-values

riboseq-analysis

Analysis of Ribosome Profiling and RNA sequence data for virus infections of host cells.

rna-virus-taxonomy

Methods for the analysis of RNA virus taxonomy.

sign-up-form

varpredict

A command line tool for predicting gene expression using genotypic data

varpredict_test_data

Test data for VarPredict pipeline

wp-deploy

Wordpress deployment