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23andmeandclinvar

Cross-reference 23andMe raw variant file with ClinVar

awesome-machine-learning

A curated list of awesome Machine Learning frameworks, libraries and software.

bcrw_phenotype_evolution

Simulation, analysis, data modifications, and helper functions/scripts. All in Matlab. My dissertation research.

biomine

Bioinformatics data-mining

charger

Characterization of Germline variants

counties_regions

I helped with a project by generating substance use plots for each county and region in MO.

covid-data-model

Data backend providing computed data for the graphs displayed at https://covidactnow.org

data-science-assignments

Repository for the Data Science learning track to host assignments.

evosim

Phenotype evolution model of branching coalescing random walkers

genomevip

hindmarsh_rose

Hindmarsh-Rose neuron model and analysis for my final nonlinear dynamics course project.

hotspot3d

3D hotspot mutation proximity analysis tool

jmol_tutorial

lipowski_lopata_99

Attempting to reproduce the model and results from Lipowski & Lopata's 1999 Phys Rev E paper.

machine_learning_coursera

programming assignments from coursera machine learning

mit_covid19_alert

music2

identifying mutational significance in cancer genomes

personal_helpful

Helpful scripts & programs

pindel

Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.

pindel2bam

Convert Pindel data into SAM & BAM formats.

reversi

Reversi board game developed in C++ using DirectX. I created this starting only from the basic rules of the game.

testing_ideas

Random ideas. Nothing to see here.

transvar

TransVar at Github

vcf2ensembl

Convert variants from VCF format to Ensembl format.

webapi

Toolkit for web-based APIs