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action-tower-launch

GitHub Action to launch a workflow using Nextflow Tower.

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atacseq

ATAC-seq peak-calling, QC and differential analysis pipeline

bioconda-recipes

Conda recipes for the bioconda channel.

config_files

Tmux & Vim config files

configs

Config files used to define parameters specific to compute environments at different Institutions

containers

Bioinformatics containers

demultiplex

Demultiplexing pipeline for sequencing data

denby_timeseries_plotter

RShiny app for plotting timeseries data from the Denby lab.

detect-nf-test-changes

Identify changes in Nextflow repo for CI testing

fetchngs

Pipeline to fetch metadata and raw FastQ files from public and private databases

funcscan

(Meta-)genome screening for functional and natural product gene sequences

hic

Analysis of Chromosome Conformation Capture data (Hi-C)

kallisto_nf

Nextflow pipeline for Kallisto pseudoalignment of RNA-Seq data

lesionanalysis

Analysis of lesion sizes on leaves using ImageJ

mag

Assembly and binning of metagenomes

metatdenovo

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

mulled

Mulled - Automatized Containerized Software Repository

multi-package-containers

Testing building mulled containers for multi-requirement tools.

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

myfirstpipeline

nanoseq

Nanopore demultiplexing, QC and alignment pipeline

nextflow

A DSL for data-driven computational pipelines

nextflow-customregistry

nextflow-demo

Basic Nextflow repo for experiments

nextflow-scratch

Scratch repo for testing Nextflow stuff. Here be monsters.

nf-aggregate

Pipeline to aggregate pertinent metrics across pipeline runs on the Seqera Platform (beta)

nf-amazon-bug

Reproducible example for nf-amazon 2.0.0

nf-canary

A minimal Nextflow workflow for testing infrastructure.