adams-charleen Goto Github PK

ad_finemap

Code supporting analyses in paper on fine-mapping AD loci

aging_clock

Data and papers related to epigenetic clocks predicting age

bioage

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

cadd-scripts

CADD scripts release for offline scoring. For more information about CADD, please visit our website

calerie_clocksanalysis

camera

Mendelian Randomization approach using Cross Ancestral Model

chatgpt-for-genetics

Chat with Open Targets genetics database leveraging text-to-graphQL capabilities of OpenAI Codex.

crossmap

CrossMap is a python program to lift over genome coordinates from one genome version to another.

dx-toolkit

DNAnexus platform client libraries

emagma-tutorial

A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.

ensembl-vep

The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

everything

gassocplot

Regional association plotter for genetic and epigenetic data

gatk

Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk repository

globalbiobankmeta-asthma

grapple

An R package for Mendelian Randomization

gwa_tutorial

A comprehensive tutorial about GWAS and PRS

health-and-wellbeing-mr

heritabilityofclass

R scripts for paper on the Heritability of Class by Arno Van Hootegem, Adrian Farner Rogne & Torkild Hovde Lyngstad

hyprcoloc

R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data

ldsc

LD Score Regression (LDSC)

markgene

A shortcut of reading Plink binary file to R (v1.0.2)

metabomaps

Data visualization on metabolic pathway maps.

mr-antihypertensives-ad

Repurposing antihypertensive drugs for the prevention of Alzheimer’s disease: a Mendelian Randomization study

mr-apss

Mendelian Randomization accounting for Pleiotropy and Sample Structure using genome-wide summary statistics

mr-presso

Performs the Mendelian Randomization Pleiotropy RESidual Sum and Outlier (MR-PRESSO) method.

mrcepid-runassociationtesting

Interface for Association Tests on the UKB Research Access Platform

mrgwasss

MrGWASSS Cleans and Visualizes GWAS Summary Statistics

mrlap

R package to perform two-sample Mendelian Randomisation (MR) analyses using (potentially) overlapping samples