adamsardar Goto Github PK

adamsardar.github.io

Bits and pieces of research

broom

Convert statistical analysis objects from R into tidy format

bzinb

Bivariate Zero-Inflated Negative Binomial Model Estimation

chemblstats

Data processioning relating to Enhancing Chemogenomics with Predictive Pharmacology paper

cplex.jl

Julia interface for the CPLEX optimization software

currentflowcentrality

A generalisation of network closeness and betweeness to all paths rather than just geodesics

docker-images

Official source for Docker configurations, images, and examples of Dockerfiles for Oracle products and projects

domain-stats

A set of scripts to help me extract domain summary information. Kinda sloppy, but an eye to improving them

fastxmusselle

Scripts to help with fasta/fastq manipulation

gravitymodelsoftrade

A play with some web scraping in R and an excuse to explore gravity trade models

hgt

Scripts to study HGT using the SUPERFAMILY database

knittrhosting.github.com

learnrcpp

A repo of me trying to learn about Rcpp.

magic-cardshuffling

Working out how best to shuffle a deck of cards

magma

R Package for Matrix Algebra on GPU and Multicore Architectures

matrix-toolkits-java

Java linear algebra library powered by BLAS and LAPACK

metadegth

metaDEGth: meta-analysis of Differentially Expressed Genes using parametric, empirically-derived P-value distributions

oss_workshop_bristol_data_week_23

Materials for the workshop 'LV=GI Workshop on Open Source Software', part of Bristol Data Week 2023

paper_openapc

article repo for PeerJ contribution

parody

Create a garbled parody text using a Markov chain of trailing word frequency.

perl-libs-custom

A collection of custom perl modules for general use in code

plot-tools

Simple scripts to allow for easy use of Matplotlib through Python

rcpportools

Rcpp integration for google's ORtools

rcpprdkit

(Incomplete) R bindings to the C++ API of RDkit

rdkit

The official sources for the RDKit library

statsmodels

Statsmodels: statistical modeling and econometrics in Python (with a devcontainer)

stonetrees

Integrating 'omics data with biological networks by solving Steiner Tree problems

tidyr

Tidy Messy Data

trap

Transcribed Proteome Annotation

treefuncs

A bunch of useful scripts for dealing with trees