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James Adler 🧬💻

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About

Enthusiastic bioinformatics data scientist fluent in Python, R, and Bash with 8+ years diverse industry experience. Highly skilled in a range of custom and open-source data science, statistical, and bioinformatics software packages and techniques. Demonstrated expertise in computational processing, analysis, interpretation, and presentation of high-dimensional, complex next generation sequencing datasets, including design of custom end-to-end pipelines for single cell analysis in cancer early detection. Experienced in leadership and project management, ranging from single department schedule coordination to complex cross-functional team problem solving and organization.

James' github stats

adler-sudo's Projects

atac-seq-analysis icon atac-seq-analysis

Visualize scATAC-seq profiles using PCA and UMAP. Construct a support vector classifier (SVC) to predict cell type given ATAC-seq expression profile.

citeviz icon citeviz

CITEViz: Replicating the Interactive Flow Cytometry Workflow in CITE-Seq

consdata icon consdata

functions for working with UCSC conservation data

dnnpremir icon dnnpremir

identify pre-miRNAs using CNN models trained on huamn pre-miRNAs dataset

dust-2015 icon dust-2015

Analysis of dust samples collected from a mixed-use athletic facility at the University of Oregon

floodwater-runtime icon floodwater-runtime

Code execution runtime for the STAC Overflow: Map Floodwater from Radar Imagery competition

motif-mark icon motif-mark

Generate image of genes given fasta file and motif file. The image identifies exons, introns, and locations of motifs within the gene.

rosalind icon rosalind

files for working through rosalind problems

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