Comments (3)
AdmiralenOla
commented on July 28, 2024
Hi! (Apologies for the wait - I have been away for a while)
Do you have any empty cells in your trait file? It looks like Scoary is running into blank (i.e. not "NA" or "." or "-") values.
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AdmiralenOla
commented on July 28, 2024
Looks like a case where I've forgot to implement an exception for what is presumably a relatively common input error... :-o
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AdmiralenOla
commented on July 28, 2024
Fixed in 1.6.11
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Related Issues (20)
- How can I explore the differences between subpopulations defined using population analysis?
- genetic differences among populations defined by population analysis HOT 2
- How to generate manhatton plot from Scoary results HOT 1
- Stop at "Calculating max number of contrasting pairs for each nominally significant gene: in the Ternimal
- Should assemblies be removed if core gene alignment shows redundancies?
- Unrecognized character found in trait file HOT 2
- UnicodeDecode Error while reading traits file
- Significance of the worst_pairwise_p HOT 3
- missing data in genotype file
- _csv.Error: field larger than field limit (131072)
- IndexError: list index out of range HOT 4
- Gene enrichments across host sites
- /var/spool/gridengine/execd/cu17/job_scripts/371921: line 11: 9884 Killed HOT 1
- I got the CSV files of all trait related genes. How do I get the important genes in all trait files?
- Question about --collapse HOT 2
- collapse flag output
- Support for non-binary traits HOT 9
- Startcol error HOT 1
- Convert vcf from parsnp to Scoary input
- Large number of significant genes HOT 1
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