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academicmarkdown

Extensions to MarkdownEditing for writing academic papers

adomingues.github.io

The journey of a bench biologist to the dark arts of bioinformatics

anomaly-detection-resources

Anomaly detection related books, papers, videos, and toolboxes

applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2017

atac-seq

awesome-cv

Awesome CV is LaTeX template for your outstanding job application

bashintrocoursezvd

Introduction to Bash by the ZDV (JGU, Mainz)

bioc-refcard

Bioconductor cheat sheet

bookdown-start

:book: A Starter Kit for Bookdown

cleanernames

Single function R package to clean the output of base::make.names

clipseq

UNDER CONSTRUCTION: CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.

clusterprofiler

statistical analysis and visulization of functional profiles for genes and gene clusters

create_r_apckages

collection of links on how to create R packages

createprojectdirectories

Simple script to quickly set-up a VC project.

deeptools

Tools to process and analyze deep sequencing data.

dersupplement

enrichr

An R interface to enrichR

filterreads

Filter alignments on sequence length and/or identity of first nucleotide.

forgotten_git

All the git commands I keep googling.

free-programming-books

:books: Freely available programming books

genstats

Statistics course for JHU Genomic Data Science Sequence

ggplot_theme_publication

ggpubr

'ggplot2' Based Publication Ready Plots

ggthemes

ggplot themes and scales

ggthemr

Themes for ggplot2.

ghibli

Studio Ghibli colour palettes for R

git-for-science

Read the paper on Authorea ->

go4bio

Golang for Bioinformatics

harmony

A responsive Jekyll theme.

jiragiler

User-friendly :small_blue_diamond:JIRA API wrapper. Track projects & issues from within R