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carnival

CAusal Reasoning for Network Identification with integer VALue programming in R

decoupler

R package to infer biological activities from omics data using a collection of methods.

decoupler-py

Python package to infer biological activities from omics data using a collection of methods.

decoupler_manuscript

Code to reproduce the results from decoupleR's manuscript

generation-pkn-cosmos

Generation of PKN for different organisms in the COSMOS framework

generation-pkn-ocean

Generation of PKN for different organisms in the OCEAN framework

gitgud

just a test

gse50760

analysis of metastatic colon cancer

monty_hall_r

intuitive step by step simulation of the monty hall problem in R with explanations

phonemes

PHONEMeS (PHOsphorylation NEtworks for Mass Spectrometry) is an R package to model signalling networks based on untargeted phosphoproteomics

piano_kramann_2017

rodriguezmier23

Inference of signaling networks from multi-condition and multi-timepoint data

scripts_open

sysbio2021_public

Copy of my scripts for sysbio course that are publicly available

test

transcriptutorial

This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL