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2023-advent-of-code

This year I am using Racket/Scheme to work out the problems.

2023_01_09_slides_plain_text

Source code and slides for plain text presentation

2023_12_ascb_poster

Poster for the American Society of Cell Biology, 2023 Edition

2023_12_poster_ascb

Poster for the American Society of Cell Biology, 2023 edition

2023_arevalo_batchcorrection

Evaluating batch correction methods for image-based cell profiling

2024_02_slas_poster

Poster for the Society for Laboratory Automation and Screening, 2024 Edition

2024_04_hackathon_brainstorm

Slides for hackathon brainstorm session

2024_05_jumptools_cellcircuits

Slides for Cell Circuits talk

2024_06_broadhacks

Slides for broadhacks presentation

2024_06_lisp_primer_cstutorials

Slides for my presentation on lisp

2024_07_funkelab

Slides for JUMP-related potential collaboration

2024_07_jump_devtools

Slides for Special topics in preparation to the JUMP hackathon

afermg.github.io

aliby

Mirror of the Swain Lab's software for high throughput microscopy analysis

bezier_toy

Explore Bézier algorithms to represent and modify cell masks.

bioinfo_lcg

cei

cei_project

cellprofiler_nix

Get Cellprofiler running using Nix

clouds

All my configs

compose.jl

Declarative vector graphics

compound-annotator

Branch to update compound annotator before merging to monorepo

compute_mgmt

Scripts and tools to manage compute, excluding dotfiles.

copairs

Find pairs and compute metrics between them.

cytodata.github.io

CytoData Society website

datasets

Images and other data from the JUMP Cell Painting Consortium

doom-emacs-write-or-die

Mini-module for increased writing motivation

emacs-pet

Tracks down the correct Python tooling executables from your virtualenvs so you can glue the binaries to Emacs and delete code in init.el

gemini-org

Org version of the Gemini beamerposter theme 🖼

github-to-sqlite

Save data from GitHub to a SQLite database