Error when using with Conda: Symbol not found: __PyInt_AsInt

[airspeed-velocity]

Error when using with Conda: Symbol not found: __PyInt_AsInt

[mdboom]

Still puzzling -- Just wanted to let you know I'm still looking into it.

[mdboom]

Are you using conda by any chance?

[ketch]

Yes, I'm using Conda.

On Tuesday, July 22, 2014, Michael Droettboom [email protected]
wrote:

Are you using conda by any chance?

—
Reply to this email directly or view it on GitHub
#79 (comment).

[mdboom]

This seems to be a case of conda and virtualenv not getting along (admittedly, they aren't supposed to). I'm working on a conda-specific plugin to handle this case... hopefully will have something shortly.

[ketch]

Great; thanks!

[mdboom]

See #84.

[ketch]

Okay, I cloned the branch referenced by #84, reinstalled asv, and tried again, but I got the same error.

[mdboom]

What does python2.7 --version display on your system? That string is used to determine if it is a conda-based python.

[ketch]

~/pyclaw_asv » python2.7 --version
Python 2.7.7 :: Anaconda 2.0.1 (x86_64)

For some reason it's still using virtualenv, though:

~/pyclaw_asv » asv run
· Fetching recent changes..
· Creating environments
·· Creating virtualenv for py2.7
·· Error running /Users/ketch/anaconda/bin/python2.7 /Users/ketch/anaconda/lib/python2.7/site-packages/virtualenv-1.11.6-py2.7.egg/virtualenv.py --no-site-packages env/py2.7
             STDOUT -------->
             New python executable in env/py2.7/bin/python2.7
             Also creating executable in env/py2.7/bin/python
             Installing setuptools, pip...
               Complete output from command /Users/ketch/pyclaw_.../py2.7/bin/python2.7 -c "import sys, pip; sys...d\"] + sys.argv[1:]))" setuptools pip:
               Traceback (most recent call last):
               File "<string>", line 1, in <module>
               File "/Users/ketch/anaconda/lib/python2.7/site-packages/virtualenv-1.11.6-py2.7.egg/virtualenv_support/pip-1.5.6-py2.py3-none-any.whl/pip/__init__.py", line 9, in <module>
               File "/Users/ketch/anaconda/lib/python2.7/site-packages/virtualenv-1.11.6-py2.7.egg/virtualenv_support/pip-1.5.6-py2.py3-none-any.whl/pip/log.py", line 8, in <module>
               File "/Users/ketch/anaconda/lib/python2.7/site-packages/virtualenv-1.11.6-py2.7.egg/virtualenv_support/pip-1.5.6-py2.py3-none-any.whl/pip/backwardcompat/__init__.py", line 66, in <module>
               File "/Users/ketch/anaconda/lib/python2.7/urllib2.py", line 94, in <module>
                 import httplib
               File "/Users/ketch/anaconda/lib/python2.7/httplib.py", line 71, in <module>
                 import socket
               File "/Users/ketch/anaconda/lib/python2.7/socket.py", line 47, in <module>
                 import _socket
             ImportError: dlopen(/Users/ketch/pyclaw_asv/env/py2.7/lib/python2.7/lib-dynload/_socket.so, 2): Symbol not found: __PyInt_AsInt
               Referenced from: /Users/ketch/pyclaw_asv/env/py2.7/lib/python2.7/lib-dynload/_socket.so
               Expected in: dynamic lookup

             ----------------------------------------
             ...Installing setuptools, pip...done.
             STDERR -------->
             Traceback (most recent call last):
               File "/Users/ketch/anaconda/lib/python2.7/site-packages/virtualenv-1.11.6-py2.7.egg/virtualenv.py", line 2338, in <module>
                 main()
               File "/Users/ketch/anaconda/lib/python2.7/site-packages/virtualenv-1.11.6-py2.7.egg/virtualenv.py", line 824, in main
                 symlink=options.symlink)
               File "/Users/ketch/anaconda/lib/python2.7/site-packages/virtualenv-1.11.6-py2.7.egg/virtualenv.py", line 992, in create_environment
                 install_wheel(to_install, py_executable, search_dirs)
               File "/Users/ketch/anaconda/lib/python2.7/site-packages/virtualenv-1.11.6-py2.7.egg/virtualenv.py", line 960, in install_wheel
                 'PIP_NO_INDEX': '1'
               File "/Users/ketch/anaconda/lib/python2.7/site-packages/virtualenv-1.11.6-py2.7.egg/virtualenv.py", line 902, in call_subprocess
                 % (cmd_desc, proc.returncode))
             OSError: Command /Users/ketch/pyclaw_.../py2.7/bin/python2.7 -c "import sys, pip; sys...d\"] + sys.argv[1:]))" setuptools pip failed with error code 1

·· Failure creating virtualenv for py2.7Traceback (most recent call last):
  File "/Users/ketch/anaconda/bin/asv", line 9, in <module>
    load_entry_point('asv==0.1', 'console_scripts', 'asv')()
  File "/Users/ketch/anaconda/lib/python2.7/site-packages/asv-0.1-py2.7.egg/asv/main.py", line 35, in main
    result = args.func(args)
  File "/Users/ketch/anaconda/lib/python2.7/site-packages/asv-0.1-py2.7.egg/asv/commands/__init__.py", line 43, in run_from_args
    return cls.run_from_conf_args(conf, args)
  File "/Users/ketch/anaconda/lib/python2.7/site-packages/asv-0.1-py2.7.egg/asv/commands/run.py", line 105, in run_from_conf_args
    profile=args.profile, machine_defaults=args.machine_defaults
  File "/Users/ketch/anaconda/lib/python2.7/site-packages/asv-0.1-py2.7.egg/asv/commands/run.py", line 148, in run
    environments = Setup.run(conf=conf, parallel=parallel)
  File "/Users/ketch/anaconda/lib/python2.7/site-packages/asv-0.1-py2.7.egg/asv/commands/setup.py", line 67, in run
    env.setup()
  File "/Users/ketch/anaconda/lib/python2.7/site-packages/asv-0.1-py2.7.egg/asv/plugins/virtualenv.py", line 68, in setup
    self._path])
  File "/Users/ketch/anaconda/lib/python2.7/site-packages/asv-0.1-py2.7.egg/asv/util.py", line 198, in check_call
    display_error=display_error, shell=shell)
  File "/Users/ketch/anaconda/lib/python2.7/site-packages/asv-0.1-py2.7.egg/asv/util.py", line 297, in check_output
    raise ProcessError(args, retcode, stdout, stderr)
asv.util.ProcessError: Command '/Users/ketch/anaconda/bin/python2.7 /Users/ketch/anaconda/lib/python2.7/site-packages/virtualenv-1.11.6-py2.7.egg/virtualenv.py --no-site-packages env/py2.7' returned non-zero exit status 1

[mdboom]

That actually makes sense. I'm using miniconda, where the version string contains "Continuum Analytics", and the detection is keyed off of those words. Yours says "Anaconda" -- it seems like we could probably key off of either, though I'm not sure what other differences between Anaconda and miniconda might exist.

[mdboom]

I'm going back and bug triaging. I suspect this is fixed by 320ae3a, but feel free to reopen, @ketch, if that's not the case.

[ketch]

Yes, it's working for me now -- thanks!