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af2slurm

Scripts to run AF2 with slurm integration

af2slurm-old

Submit AlphaFold colab batch jobs to slurm

ajasja.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

ajlogger

A small logging utility

altair

Declarative statistical visualization library for Python

calculate_dihedrals

A VMD script to calculate side-chain and backbone dihedrals (torsion angles)

cc_protein_origami

Design platform for creating single-chain polyhedral cages made from coiled-coil building modules

client

Repository for the ownCloud Desktop Syncing Client

ddg

A DDG benchmark capture containing the benchmark dataset and benchmarked protocol captures.

denovoheterodimers

Scripts and data deposition for de novo heterodimers manuscript

diffusivedynamics

Calculate position-dependent diffusion coefficients in one and two dimensions from collective variables trajectories.

domesticator

domesticator_3

files

Hosting for various files needed in notebooks and online examples

helix

Program to calculate alpha-helical propensities

homooligomer_rmsd

Script to calculate RMSD between symmetric homo-oligmoers

insrtr

Regulation of proteins using coiled-coils

isambard

Intelligent System for Analysis, Model Building And Rational Design.

isambard-1

Intelligent System for Analysis, Model Building And Rational Design of biomolecules.

jda

Jupyter desktop application (runs a jupyter notebook server and a chromium instance).

listviewreorderdemo

A demo of reordering item in a TListview (Delphi)

ljmd-c

Lennard-Jones MD code in C for teaching purposes

ljmd-opencl

Collaborative development of OpenCL version of LJMD by Axel K.

lumicks_image_alignment

Scripts to align various channels based on reference beads.

mp3-duet-autotune

Data and analysis code for MP3-Seq

mpld3

D3 Renderings of Matplotlib Graphics

namd_templates

A TCL templatng system for use with the molecular dynamics program NAMD.

nbopen

Open an IPython notebook in the best available server

nbrun

Batch-run Jupyter IPython notebooks optionally passing arguments.

ngb2h

Code accompanying the article "A Multiplexed Bacterial Two-Hybrid for Rapid Characterization of Protein-Protein Interactions and Iterative Protein Design"