ajw2329 Goto Github PK

ajw2329.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

blogs_tutorials

cds_insertion

Tool for identifying CDS in unannotated transcripts based on in silico translation from overlapping annotated start codons. Enclosed tools also help infer coding-associated properties of pairwise alternative splicing events.

clusgapkb

Parallelised Gap Statistic (Tibshirani et al., 2001) calculation and clustering

congress_twitter

Use machine learning to classify tweets by members of congress as republican/democrat.

data-driven-web-apps-with-flask

Course demo code and other hand-out materials for our data driven web apps in Flask course

data-engineering-practice

Data Engineering Practice Problems

ggsashimi

Command-line tool for the visualization of splicing events across multiple samples

heterogenesis

Simulates genomes for multiple related clones in a heterogeneous tumour, along with a matched germline genome.

junctioncounts

Utils for identifying pairwise alternative splicing events and quantifying them using junction reads.

links

Links to my various pages and projects.

ml_zoomcamp

DataTalks.club ML zoomcamp

multi_species_as_events

mutationalpatterns

R package for extracting and visualizing mutational patterns in base substitution catalogues

portfolio-linktree

portfolio in the style of linktree

splice_lib

splice_lib_utils

Tools for analyzing pairwise alternative splicing events generated by splice_lib/junctionCounts

transcript_tools

Tools for adding, translating, and understanding the consequences of coding sequences with respect to transcript structure

w-wessim2

A tool for in silico whole-exome sequencing.