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Ali Khan's Projects

app-fmriprep icon app-fmriprep

fMRIPrep is a functional magnetic resonance imaging (fMRI) data preprocessing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to variations in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.

ashs-bids icon ashs-bids

SnakeBIDS app for ASHS hippocampal subfield segmentation

avgruns icon avgruns

pipeline for motion-correcting and averaging runs

avgruns_smk icon avgruns_smk

Snakemake workflow for register and avg runs from a bids dataset

circle-ci icon circle-ci

example builder for Singularity containers using Circle Continuous Integration, circle-ci

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