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ants_build_template_smk

Snakemake workflow for building an ANTS template (from antsMultivariateTemplateConstruction2.sh)

aoc2018

aoc2020

advent of code

app-fmriprep

fMRIPrep is a functional magnetic resonance imaging (fMRI) data preprocessing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to variations in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.

app-hippunfold-t1

Brainlife app for hippunfold

ashs-bids

SnakeBIDS app for ASHS hippocampal subfield segmentation

avgruns

pipeline for motion-correcting and averaging runs

avgruns_smk

Snakemake workflow for register and avg runs from a bids dataset

baby-shower

Baby shower website

basalfb-diffparc

batch-hippunfold

Snakemake workflow for batch job submission with hippunfold container

batch-snakedwi

Batch submit workflow for snakedwi

bids-apps.github.io

Portable neuroimaging pipelines that understand BIDS datasets

bigstitcher-spark

Running compute-intense parts of BigStitcher distributed

biomarkerproject

brainhackwestern.github.io

brainlife-computecanada

Docs and readme for setting up Brainlife with Compute Canada

brainstat_luciana

canbind2bids

cbrain-plugins-neuro

cccvtk

The Canadian Common CV Toolkit

circle-ci

example builder for Singularity containers using Circle Continuous Integration, circle-ci

clark_maguire_bidsify

BIDS conversion of Clark and Maguire 2023 dataset

clinical-atlasreg

compare_spiral_dwi

Snakemake workflow for comparing 7T spiral vs non-spiral dwi

conda-snakebids-builds

assortment of conda build files to get snakebids built

consensus_study_snakedwi

workflow for processing ISMRM Diffusion Study - Best Practices in Image Preprocessing data

cookiecutter-snakebids

Cookiecutter template for a Python package.

cookiecutter-snakemake-workflow

A cookiecutter template for Snakemake workflows

core