Name: Alan Hoyle
Type: User
Company: UNC Lineberger Comprehensive Cancer Center
Bio: Learning Bioinformatics on the job.
Location: Chapel Hill, NC, USA
Blog: http://alanhoyle.com/
Alan Hoyle's Projects
Assembly Based ReAligner
ABRA2
Config files for my GitHub profile.
A cd command that learns - easily navigate directories from the command line
Utility to check Binary Sequence Alignment / Map (BAM) files for corruption and repair them
A powerful toolset for genome arithmetic.
Conda recipes for the bioconda channel.
Syntax highlighting for computational biology
Canvas - Copy number variant (CNV) calling from DNA sequencing data
Bioinformatics containers
Coursera Data Sciences
The Leek group guide to data sharing
Passphrases to remember
Dockerfile for Illumina bcl2fastq
Repository of Docker images created by Continuum Analytics
Docker images of bioinformatics software built with Linuxbrew
Do-It-All Mechanical Macropad
A duckyPad config for macOS with SQL commands
The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
A quality control analysis tool for high throughput sequencing data
Some quick 'n dirty variant calling tools
Bayesian haplotype-based genetic polymorphism discovery and genotyping.
dbGaP data validation tool repo
A collection of useful .gitignore templates
A good enough project template for writing reproducible code
Hyperjump - simple and quick bookmark tool for bash
iTerm2 is a terminal emulator for Mac OS X that does amazing things.
A guided, intuitive introduction to genomics for software engineers. Curated by the community.
A full-featured & carefully designed adaptive prompt for Bash & Zsh
Report low coverage regions by e.g. gene given a coverage file and a targets definition file.