Alan Sebastián García's Projects
WebGL accelerated JavaScript molecular graphics library
:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
Config files for my GitHub profile.
The Alexa Skills Kit SDK for Python helps you get a skill up and running quickly, letting you focus on skill logic instead of boilerplate code.
Software for aligning viewing and editing dna/aminoacid sequences, intuitive, fast and lightweight. Download and website:
Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
Applied Computational Genomics Course at UU: Spring 2020
Applied Machine Learning for Healthcare and Life Sciences using AWS, published by Packt
Archaeopteryx.js is a software tool for the visualization and analysis of highly annotated phylogenetic trees.
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
A program to automatically process qPCR data from csv files in any PCR machine. To create a normalized table of RNA/DNA quantities, statistics and bar charts.
A machine learning approach of automatic identification and counting of all types of blood cells: RBCs, WBCs, and Platelets with K-nearest neighbor (KNN) and intersection over union (IOU) based verification.
A curated list of awesome open source libraries to deploy, monitor, version and scale your machine learning
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Genomics Workflows on AWS
BCCD (Blood Cell Count and Detection) Dataset is a small-scale dataset for blood cells detection.
This repository will assist you in creating a more beautiful and appealing github profile, and you will have access to a comprehensive range of tools and tutorials for beautifying your github profile. 🪄 ⭐
🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
Docker container for bioinformatics tools and pipelines
For managing BioNeMo Service Example notebooks
Official git repository for Biopython (originally converted from CVS)
biotoolsregistry : discovery portal for bioinformatics
BiOinfOrmatics ThreAded Benchmark tooLsuitE (BOOTABLE)
A Python library to extract tabular data from PDFs