alastair-droop Goto Github PK

201902-sathya-python

Python tutorials

2023-medical-ai

Slides from my Medical AI talk at Plymouth November 2023

allineate

Align lines in a file by the first occurrence of a given substring

apdmisc

Alastair Droop's miscellaneous R functions

associationgml

A script to convert simple association files to graphML format.

bamwindow

Print the number of reads aligning to windows of a fixed size in a BAM file.

checkcel

Rapid validity testing of Affymetrix .CEL files

clipumi

Detection and Removal of initial UMI Tags from FASTQ Files

ctupdate

A simple script to bulk update file ctime attributes.

cutadapt-stats

Extract basic statistics from cutadapt log files

ecmcqpcr

R package for analysis of circulating miRNA from qPCR data

extract-counts

Extract specific gene ID rows from counts CSV files by first column

fastq-dedup

Identify and group duplicated FASTQ files

fastq-metadata

Extract statistics from FASTQ file headers

filechars

Tabulate single characters in a file

filter-counts

Filter HTSeq Counts matrix files

finalchar

Display the final character of a file

fqtools

An efficient FASTQ manipulation suite

gencode-refset

qsubsec templates for generating reference datasets from GENCODE

hdruk-fellows-day-2018

Machine Learning Resources collected from the HDRUK UK Fellows's day 2018 (2018-11-15)

marginlines

Simple lines and arrows in R plot margins

mcnv-tutorial

Tutorial for using the MCNV package

methods-club-20180227

LIMM Methods Club 2018

misc-tools

Miscellaneous Bioinformatics Scripts

mrs-ravoon

Alternative Endings to Alternative Endings to an Unwritten Ballad

multicomponent

Simple tools to extract multicomponent (FAM & ROX) data from Thermo Fisher EDS and amplification files.

northernbug10-git-workshop

NorthernBUG10 Introduction to Git Workshop

process-featurecounts

Process and simplify featureCounts output files

python-flowkit

qstools

SGE job & log summarisation scripts