Comments (2)
Hi @Kiliankleemann,
Not at this time. bed2gtf
was build with the goal to make the conversion faster but complete (including gene_ids); however, I can consider to make it an option (maybe a flag --no-gene
(?)) in the next release.
If you need that functionality right now, I think the best option is to use UCSC's C binaries (bedToGenePred
+ genePredToGtf
)
Best,
Alejandro
from bed2gtf.
Hey @Kiliankleemann
Just to let you know that now you can convert any bed into gtf without a isoforms.txt
by simply specifying --no-gene
, something like this:
bed2gtf -b your.bed -o out.gtf --no-gene
Best,
Alejandro
from bed2gtf.
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from bed2gtf.