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anammox-soil-tree

anammoxbellefontaine

arctic-nitrifiers

Pipeline used to analyse archaeal amoA amplicon sequencing, mainly based on DADA2

arsm-evolutionary-placements

This script describes the processing of Illumina MiSeq reads from arsM amplicons sequencing. The results were published here: Matthew C. Reid, Julien Maillard, Alexandre Bagnoud, Leia Falquet, Phu Le Vo, and Rizlan Bernier-Latmani (2017). Arsenic Methylation Dynamics in a Rice Paddy Soil Anaerobic Enrichment Culture. Environmental Science & Technology. DOI: 10.1021/acs.est.7b02970

bmp-ampts2

This R script automatically analyses the daily reports generated by AMPTS II in order to produce useful tables and plots.

bmp_nautilus

This R script automatically analyses raw data produced by a Nautilus BMP unit from Anaero Technology, calculating the specific biomethane yields and plotting them.

ch-covid19-new-vs-total

cr_bioreduction_aare_sediments

dissolved-gas-calculator

This script calculates what is the concentration of a dissolved gas in water, knowing the gas concentration in headspace (ppm), the pressure of headspace (bar), the chemical formula of the gas, and the temperature (in celsius)

linking-16s-to-amoa-taxonomy

otu-table-to-bubble-plot

R script to create from OTU/ASV tables nice bubble plots for your scientific publications

probe-capture

sedmet_project

sibtran