Comments (1)
alexdhill
commented on August 15, 2024
Update: this error persists when the GTF is provided during alignment:
STAR --genomeDir ../../reference.tmp/T2Tv2_index_v2.7.11a.star --readFilesIn read1.fastq.gz read2.fastq.gz --sjdbGTFfile annotation.gtf --limitSjdbInsertNsj 6000000 --quantMode TranscriptomeSAM --outFileNamePrefix sample. --outSAMtype BAM SortedByCoordinate --runThreadN 8
STAR version: 2.7.11a compiled: 2023-09-15T03:04:06+0000 :/opt/conda/conda-bld/star_1694746407721/work/source
Jul 11 11:33:41 ..... started STAR run
Jul 11 11:33:41 ..... loading genome
Jul 11 11:36:25 ..... processing annotations GTF
Jul 11 11:40:55 ..... inserting junctions into the genome indices
EXITING because of FATAL GENOME INDEX FILE error: transcriptInfo.tab is corrupt, or is incompatible with the current STAR version
SOLUTION: re-generate genome index
Jul 11 12:00:20 ...... FATAL ERROR, exiting
from star.
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