Comments (4)
Hi Ian,
this is a goo suggestion, however, I am afraid that changing default values will break people's pipelines. I need to poll users to see how often the unmapped reads are not stored.
Cheers
Alex
from star.
Did you ever add an option to save unmapped reads?
from star.
Hi Alex,
yes, this option is available for a long time, it's just not the default behavior: --outSAMunmapped Within.
Cheers
Alex
from star.
Thanks!
from star.
Related Issues (20)
- Velocyto output from starsolo HOT 1
- STARsolo: --twopassMode Basic not compatible with --soloFeatures GeneFull_Ex50pAS
- ReadsPerGene.out.tab column values clarification HOT 2
- Resolved: "BUG: next index is smaller than previous, EXITING" Error During Genome Index Generation with STAR HOT 2
- Issues when I try to use STAR to align RNAseq reads to genome index
- Why some alignments do not include GX tag or include "GX:Z:-" HOT 1
- Chimeric reads alignment. Some threads take much longer to complete. HOT 1
- Error building docker image when compiling STAR on Mac M2 chip : error g++: error: unrecognized command-line option '-mavx2'
- EXITING because of FATAL ERROR: cannot insert junctions on the fly because of strand GstrandBit problem HOT 1
- Aligned BAM files have some reads with not its paired mates HOT 2
- No Chimeric.out.junction file generated HOT 3
- Installing STARsolo on M1 mac HOT 2
- Read Count Discrepancy HOT 1
- multi mapping parameters and centromere HOT 3
- Reads With Valid Barcodes=zero in STARsolo analysis HOT 3
- Interaction between STARsolo and STAR diploid HOT 2
- Output SAM file contains only QNAMEs from forward fasta not reversed HOT 1
- The analysis indicators for Smart-seq2 seem abnormal. HOT 1
- STAR human GRCH38
- Indexing the Reference Genome is not done in STAR HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from star.