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mspy

Small Python library for parsing output from Hudson's MS

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

nerdcommenter

Vim plugin for intensely nerdy commenting powers

nf-core_configs

Config files used to define parameters specific to compute environments at different Institutions

ontseq_qc

phylophlan

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes

pmdtools

Compute postmortem damage patterns and decontaminate ancient genomes

quarto-nvim-kickstarter

A neovim configuration to get you up to speed

rrdm_workflow_management

sam2lca

Lowest Common Ancestor from a SAM/BAM/CRAM alignment file

sex.deterrmine

A python script to calculate the relative coverage of X and Y chromosomes, and their associated error bars, from the depth of coverage at specified SNPs.

simulome-py3

Simulome, genome and mutant variant simulator.

snakemake-pipeline-template

Cookiecutter template for Snakemake pipelines

snakemake-wrapper-utils

Utility functions and classes shared between Snakemake wrappers

snakemake-wrappers

Modules of common programs and scripts for Snakemake

snakemake-wrappers-public

This is the development home of the Snakemake wrapper repository, see

taxprofiler

Highly parallelised multi-taxonomic profiling of shotgun metagenomic data

upsetr

An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

yhaplo

Identifying Y-chromosome haplogroups in arbitrarily large samples of sequenced or genotyped men