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Alexis Lucattini's Projects

alpine-images icon alpine-images

A nicely laid out set of alpine images to set as base images - particularly for conda packages - all packages auto-built

amazon-ecr-user-guide icon amazon-ecr-user-guide

The open source version of the Amazon ECR user guide. You can submit feedback & requests for changes by submitting issues in this repo or by making proposed changes & submitting a pull request.

arriba icon arriba

Fast and accurate gene fusion detection from RNA-Seq data

betaduck icon betaduck

Organising / summarising a PromethION Beta Nanopore Run

bio-cwl-tools icon bio-cwl-tools

CWL CommandLineTool descriptions for biology/life-sciences related applications

boubs icon boubs

Bunch Of Useful Bash Scripts

cowsay-motd-cwl icon cowsay-motd-cwl

A CWL Workflow to generate a message of the day with helpful hints.

dracut-crypt-ssh icon dracut-crypt-ssh

dracut initramfs module to start dropbear sshd during boot to unlock the root filesystem with the (cryptsetup) LUKS passphrase remotely

ensembl-vep icon ensembl-vep

The Variant Effect Predictor predicts the functional effects of genomic variants

fancy-motd icon fancy-motd

Fancy, colorful MOTD written in bash. Server status at a glance.

genphen icon genphen

Tool for genome wide association studies with Bayesian inference and statistical learning

gridss icon gridss

GRIDSS: the Genomic Rearrangement IDentification Software Suite

hmftools icon hmftools

Various algorithms for analysing genomics data

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