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Alex Teghipco's Projects

ale_template icon ale_template

This script formats coordinates for meta-analysis in gingerAle

basicvbm icon basicvbm

VBM with correlation, partial correlation, distance correlation, partial distance correlation or mediation analysis

bicknee icon bicknee

Accentuate knee in BIC curve for model selection

bimodalitycoefficient icon bimodalitycoefficient

Implementation of approach described in "Good things peak in pairs: a note on the bimodality coefficient" by Pfister and colleagues (2013)

brainagerregional icon brainagerregional

brainageR scripts edited to make predictions based on regional GM, WM, and CSF

brainsurfer icon brainsurfer

MATLAB toolbox for visualizing brain data on surfaces.

colin2mni icon colin2mni

Transformation from Colin27 to MNI152 (2mm)

consensusclustering icon consensusclustering

Package for performing consensus clustering in MATLAB. In the process of being updated...

correlogram icon correlogram

Create beautiful tiles of scatterplots between variables in MATLAB

ctperfusionpipeline icon ctperfusionpipeline

A pipeline for processing CT perfusion images output by RAPID (i.e., conversion to scalar, co-registration, normalization)

displacement icon displacement

Compute mean framewise displacement and absolute displacement

eta2 icon eta2

Compute eta2 coefficient for connectivity maps

evaltsne icon evaltsne

Evaluates solution divergence values (Kullback-Leiber) across tSNE models with varying perplexities

helpers icon helpers

Some scripts for folks (NiiStat-related)

lindawarper icon lindawarper

Apply warps generated by linda to take other native space files to ch2 template space

metaanalysisresources icon metaanalysisresources

A kind of tutorial for meta-analysis with Neurosynth and BrainMap (emphasis on Neurosynth w/code)

metabiasns icon metabiasns

A version of meta.py script used by Neurosynth that will additionally determine the amount of contra-evidence required to overturn a significant effect within a voxel

niftimatlabtutorial icon niftimatlabtutorial

Learn to manipulate nifti files in Matlab by converting an atlas from surface to volume space

physalign icon physalign

Align physiological data collected in MRI to dicoms

plswithstabselvip icon plswithstabselvip

Train and test a tuned PLS model, either on its own or with VIP as a feature selection procedure with stability selection as a wrapper

stabilityselection icon stabilityselection

Perform stability selection in matlab using a variety of feature selection methods

voldnn icon voldnn

Relatively flexible examples for building DNNs with volumetric data in pytorch

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