alistairnward Goto Github PK
Name: Alistair Ward
Type: User
Company: Frameshift Genomics
Location: Boston, MA
Blog: frameshift.io
Name: Alistair Ward
Type: User
Company: Frameshift Genomics
Location: Boston, MA
Blog: frameshift.io
Tool for checking Mosaik BAM integrity
C++ API & command-line toolkit for working with BAM data
Provides scripting for alignment and variant calling
Library for handling tool and pipeline configuration files
Get mean coverage for a list of regions
Get mean coverage for a list of regions
Mutate reference sequence
genome simulation across a population with zeta-distributed allele frequency, snps, insertions, deletions, and multi-nucleotide polymorphisms
"pre-Mosaik" application to estimate suitable alignment parameters
Split-read aligner
C++ implementation of vcfPytools. The layout of the code is based on bamtools by Derek Barnett.
vcf file manipulation
Structural variant detection and association testing
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