Comments (9)
@alfonmedela This is currently not implemented, but I will consider it high-priority in my next iteration with the code. Or... You are always welcome to submit a PR.
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Did you find a solution to this @cabaker7 ? I am having the same problem and I can't find a straightforward way to solve it
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Hello, I have the same problem. Have you solved it?
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I also have the same problem. Have you been able to implement it?
thks :-)
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Any solution ? I used pyelastix to register two medical images, i wanna reproduce the same transformation on their respective masks(for segmentation purposes) , i cant find a way to exploit the resulting field to do so.
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Hello,
@FakerAmine I think it might be possible to use the field and pass it somehow to another library like SimpleITK to generate a deformation field. However, I'm not sure how to do it, for the time being when I apply the deformation in this way the result is far from the expected, could be related to how the axes are defined. Not sure. Could also be other libraries to work with the numpy array directly, maybe scipy has something to work with this?
I was working based on this with SimpleITK in case it is useful: SimpleITK/SimpleITK#1285
If anyone can figure it out please share. I'll do the same.
Thanks
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@manuel-lincbiotech Thank you ! I will try doing that !
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Hello,
@FakerAmine, got any positive results using the SimpleITK route?
I am facing the same issue right now.
Thanks
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Any solution ? I used pyelastix to register two medical images, i wanna reproduce the same transformation on their respective masks(for segmentation purposes) , i cant find a way to exploit the resulting field to do so.
pyelastix is really great for registration. But I solved the same problem as you mentioned using ANTsPy. You can follow this example for more information https://github.com/ANTsX/ANTsPy/blob/master/tutorials/concatenateRegistrations.ipynb
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Related Issues (20)
- Make the example self-sufficient HOT 5
- Registered image quality
- BufferError: memoryview: underlying buffer is not C-contiguous HOT 5
- No such file or directory: '/opt/local/bin' HOT 5
- image registration
- Package status HOT 5
- Executable detection in Linux HOT 14
- average intensity & std in result image HOT 1
- Installation instructions for macOS HOT 1
- RGB image registration HOT 1
- 2D-3D registration HOT 1
- Settings of the parameters NumberOfResolutions and MaximumNumberOfIterations? HOT 3
- Can not obtain Elastix command-line application HOT 1
- Using a custom similarity metric HOT 1
- conda install pyelastix or elastix? HOT 5
- Output error HOT 1
- Get affine transformation parameters HOT 1
- Output scale/range HOT 2
- elastix on MacOS, dyld: Library not loaded: libANNlib.dylib HOT 1
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