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atlaskit

Tools for processing and merging anatomic atlas label volumes

autism-gradients

brainsurfacescripts

python scripts for simple operations on brain surfaces

c-pac

Configurable Pipeline for the Analysis of Connectomes

cell-cell-interactions

Tutorial/review and benchmark of cell-cell interaction prediction tools based on single-cell transcriptomic data

cwas-paper

Scripts to analyze data and generate figures for the CWAS paper

deep-visualization-toolbox

DeepVis Toolbox

diffusiontensorimaging

Single Shell Free Water Elimination Model for Diffusion Tensor Imaging

enigma_tourette

fid-a

Toolbox for simulation and processing if in-vivo magnetic resonance spectroscopy data

free-water-elimination-dti

Reproduce the artice Hoy et al. 2014 Optimization of a free water elimination two-compartment model for diffusion tensor imaging. Neuroimage 103:323-33. doi: 10.1016/j.neuroimage.2014.09.053

gannet2.0

geneexpression_repository

Maps gene samples into surface parcellation

glugaba

gluiron

Pipeline for the anaylsis of QSM data

glurest

Pipeline for the analysis of Multiband Resting state fMRI data.

glutamate

pipeline for the analysis of MRS PRESS data

gseapy

Gene Set Enrichment Analysis in Python

ica-aroma

Software package of ICA-AROMA; a data-driven method to identify and remove motion-related independent components from functional MRI data.

islr-python

keras

Deep Learning for humans

lowess

A Python implementation of the lowess algorithm

morphometric_similarity_sz

Morphometric similarity in psychosis- data and code

mriqc

mriutils

MRI Utility Functions

mrs

mrs_mri_libs

Contains libraries for reading, writing and analysing Magnetic Resonance Spectroscopy and Imaging (MRS & MRI) data.

mrstissueclass

nilearn

Machine learning for NeuroImaging in Python

nspn_whitakervertes_pnas2016

Data and analysis code to reproduce the NSPN Manuscript "Adolescence is associated with genomically patterned consolidation of the hubs of the human brain connectome".