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admix-kit

Toolkit for analyzing genetics data from admixed populations

adv-gwas-tutorial

afumigatus-rnaseq

NGS pipeline for processing Aspergillus fumigatus RNA-Seq data and studying gene expression, alternative splicing events, and novel transcripts.

analysis_pipeline

TOPMed analysis pipeline

atrtd3

analysis script for construction of atRTD3

bash-scripts-for-thesis

This repository contains scripts used during my thesis for genomic data manipulation with Plink, genotype imputation with FImpute3, genetic parameter and GWAS analysis with GCTA, breeding value estimation with BGLR and many more

beautiful-visualization-with-r

《R语言数据可视化之美》配套代码

biocode

Bioinformatics code libraries and scripts

bioinfo-combio

The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/

bioinfohub

bioinformatics-one-liners

Bioinformatics one liners from Ming Tang

bioscripts

a bucket of bioinformatics scripts

blink-python-gwas-

burchardlab_tutorials

cacao_genomics

This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes

cgat-apps

cgat-apps repository

chatbot-ui

An open source ChatGPT UI.

code

Here you can find my whole projects resume, as well as my code in different languages

computational-genomics-with-r

diff_splice_paper

Code for differential splicing comparison paper (Soneson, Matthes, et al.)

dpdispatcher

generate HPC scheduler systems jobs input scripts and submit these scripts to HPC systems and poke until they finish

drppm

Integrated software for processing omics data.

efficient_python_tricks_and_tools_for_data_scientists

Efficient Python Tricks and Tools for Data Scientists

ezlncpred

A Python package with integrated lncRNA prediction methods

free_r_tips

Free R-Tips is a FREE Newsletter provided by Business Science. It comes with bite-sized code tutorials every week.

fuc

Frequently used commands in bioinformatics

full_spectrum_bioinformatics

An open-access bioinformatics text

fungap

FunGAP: fungal Genome Annotation Pipeline

gaiaassociation

gaiaAssociation is a tool to detect the cell specific enrichment of loci in regulatory regions through the sum of non-identical binomials

genetics-finemapping

Fine-mapping pipeline for Open Targets Genetics