amithjkamath Goto Github PK

3dunetcnn

Pytorch 3D U-Net Convolution Neural Network (CNN) designed for medical image segmentation

amithjkamath

amithjkamath.github.io

A beautiful, simple, clean, and responsive Jekyll theme for academics

astra

Atomic Surface Transformations for Radiotherapy quality Assurance

autonue

bme-labs

Repository for materials related to the biomedical engineering lab

cocoapi

COCO API - Dataset @ http://cocodataset.org/

codesamples

general code samples in C++, python and MATLAB.

context_vs_fbr

This repository supports our recent MedNeurIPS 2022 abstract on the importance of context versus foreground-to-background ratio in segmentation tasks.

csaodfcode

MATLAB implementation of the CSA ODF Algorithm. More at: http://conservancy.umn.edu/handle/11299/140183

deepdosesens

How Sensitive Are Deep Learning Based Radiotherapy Dose Prediction Models To Variability In Organs At Risk Segmentation?

dipy

DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

doselo

DOSELO (Dose Segmentation Loss Function): Dose Guidance for Radiotherapy-oriented Deep Learning Segmentation

fastbook

The fastai book, published as Jupyter Notebooks

gpssi

Implementation of the GPSSI paper

image-registration

This is a demonstration of how transformation matrices affect registration for the rigid case.

imageviewer

this is a simple image viewer based on QT 4.8 It is an extension of the tutorial at http://qt-project.org/doc/qt-4.8/widgets-imageviewer.html

imclass

A simple image object framework to read and write image files.

mialab

Medical Image Analysis Lab (MIALab), University of Bern

miccaihackathon_shifts

monaibootcamp2021

Materials for the 2021 MONAI Bootcamp

montyhall

This is an interactive Monty Hall problem demonstration with a MATLAB UI.

nightowlsapi

(MIRROR) This is the SDK for NightOwls dataset (http://www.nightowls-dataset.org/)

nnunet

open-kbp

Develop dose prediction models for knowledge-based planning in radiotherapy

opencv

Open Source Computer Vision Library

phiseg-code

Tensorflow Code for "PHiSeg: Capturing Uncertainty in Medical Image Segmentation", Proc. MICCAI 2019

portpy

Opensource radiation treatment planning system in Python

pyradise

Python-based Radiotherapy Dicom Segmentation library (PyRaDiSE)

segment-anything

The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.