Comments (1)
For the rename
branch to be merged into main
, I need to fix or add the following:
-
The controls for how headers are renamed (add_month
,add_gene
,add_passage
) is hidden under a single flagrename
. Should these be exposed? - Handle if the date is missing
- Handle if the designation is missing
- output unmatched records and print this to terminal
- fix the issue with spaces not being replaced with
_
. - Handle ascii character
'
-> replace with nothing''
- There's an issue with
write_sequences
, it expects a dict which works for when sequences are renamed. If they are not renamed, a list is given towrite_sequences
. Two options,write_sequences
detects the object type and acts accordingly or a new function needs to be written.
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