ammounaliza Goto Github PK

2018-03-06-ibioic

Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.

2306-wolinski-chaining

amazon-sagemaker-protein-classification

Implementation of Protein Classification based on subcellular localization using ProtBert(Rostlab/prot_bert_bfd_localization) model from Hugging Face library, based on BERT model trained on large corpus of protein sequences.

ammounaliza

Config files for my GitHub profile.

antibody-in-pytorch

Machine learning models for antibody sequences in PyTorch

applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2020

beam

Apache Beam is a unified programming model for Batch and Streaming

biopandas

Working with molecular structures in pandas DataFrames

biotite

A comprehensive library for computational molecular biology

bnc

Data scraper for the Brave New Coin API

chembl_webresource_client

Official Python client for accessing ChEMBL API.

cs-video-courses

List of Computer Science courses with video lectures.

deep-learning-with-python-notebooks

Jupyter notebooks for the code samples of the book "Deep Learning with Python"

dlab-public

Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"

drugbank

User-friendly extensions of the DrugBank database

fimmcherry

gcp_poo_study

genbase

Code for GenBase: complex analytics based genomics benchmark

getting-started

Getting started with Docker

how-to-python

basic Python scripts for data visualization

machine-learning-snippets

Python Machine Learning Snippets contains various machine learning examples as Jupyter notebooks with scikit-learn, statsmodel, numpy and other libraries.

matplotlib

matplotlib: plotting with Python

ncbi-acess

neutcurve

Fit and plot neutralization curves

papers_for_protein_design_using_dl

List of papers about Proteins Design using Deep Learning

picard

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

plantsandpython

pygments

Pygments is a generic syntax highlighter written in Python

pynanomapper

A Python client for the eNanoMapper API

screening_mgmt

Screening management package for data management