ampliconsuite Goto Github PK
Name: AmpliconSuite
Type: Organization
Bio: A collection of related tools for studying focal amplifications in cancer genomes
Name: AmpliconSuite
Type: Organization
Bio: A collection of related tools for studying focal amplifications in cancer genomes
Organization documentation
Identify one or more connected, focally amplified genomic regions to elucidate the architecture of focal amplifications such as ecDNA.
Classify output of AmpliconArchitect to detect types of focal amplifications present
Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data
Website to host AmpliconSuite outputs, including AA outputs and resulting focal amplification classifications, such as ecDNA.
A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect. Previously called PrepareAA.
Aggregates the results from AmpliconSuite for upload to AmpliconRepository.org
Conda recipes for the bioconda channel.
Reconstruction of focal amplifications with long reads
Visualize outputs of AmpliconArchitect and AmpliconReconstructor in Circos-style images.
Simulate ecDNA structures with user-specified properties.
Utility script for downloading bam (or other file types) from GenePattern
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.