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Aaron Wenger's Projects

bwa icon bwa

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

deepvariant icon deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

giab_data_indexes icon giab_data_indexes

This repository contains data indexes from NIST's Genome in a Bottle project.

hts-specs icon hts-specs

Specifications of SAM/BAM and related high-throughput sequencing file formats

igv icon igv

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

minimap2 icon minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

pbrugd-workflow icon pbrugd-workflow

Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads

pbrugd-www icon pbrugd-www

Web browser-based system to evaluate variant calls in human genomes from PacBio HiFi reads

pyvcf icon pyvcf

A Variant Call Format reader for Python.

survivor icon survivor

Toolset for SV simulation, comparison and filtering

sv-benchmark icon sv-benchmark

Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data

truvari icon truvari

Structural variant comparison tool for VCFs

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