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Andrew Smith's Projects

adapto-rs icon adapto-rs

Remove adaptors from short-read bisulfite sequencing data (coded in rust)

adssrc icon adssrc

A subset of the programs I use in my own data analysis.

dnmtools icon dnmtools

Tools for analyzing DNA methylation data

falco icon falco

A C++ drop-in replacement of FastQC to assess the quality of sequence read data

libz-sys icon libz-sys

Rust crate package to link to a system libz (zlib)

mcounts icon mcounts

Implementation of count from dnmtools in rust

mlevels icon mlevels

Implementation of the levels command from dnmtools in rust

msite icon msite

Implementation of msite in rust

msym icon msym

Make sites symmetric CpGs in counts format DNA methylation levels

preseqr icon preseqr

An R package for estimating library complexity

pysradb icon pysradb

Package for fetching metadata and downloading data from SRA/ENA/GEO

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