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Andrew J. Rech's Projects

cellseg icon cellseg

CellSeg: a robust, pre‑trained nucleus segmentation and pixel quantification software for highly multiplexed fluorescence images

clipboard icon clipboard

📋 cross-platform clipboard package that supports accessing text and image in Go (macOS/Linux/Windows/Android/iOS)

codex icon codex

Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation

dt.inflix icon dt.inflix

Additional inflix operators for the R package datatable

geomxworkflows icon geomxworkflows

Workflows for analyzing data with the GeomxTools package and subsequent GeoMx related packages

insitutype icon insitutype

An R package for performing cell typing in SMI and other single cell data

lazygit icon lazygit

simple terminal UI for git commands

opencommit icon opencommit

Auto-generate impressive commits with AI in 1 second 🤯🔫

ot2-scripts icon ot2-scripts

Staining protocol scripts for PAR2 instruments and OT-2 liquid handler

piknik icon piknik

Copy/paste anything over the network.

polly icon polly

polly is a simple CLI tool to transform academic plain text files into audio using AWS Polly.

s3link icon s3link

Upload files from Stdin to AWS S3 and generate an authenticated URL.

seurat icon seurat

R toolkit for single cell genomics

spatialomicsoverlay icon spatialomicsoverlay

Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).

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