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Andrii Gegliuk's Projects

ants_tbss icon ants_tbss

TBSS (FSL) implementation with ANTs and T1w registration to template

antspy icon antspy

Advanced Normalization Tools in Python

atlasbrex icon atlasbrex

atlasBREX: Automated averaged template-derived brain extraction in animal MRI

ben_project icon ben_project

A generalized Brain Extraction Net for multimodal MRI data from rodents, nonhuman primates and humans

brkraw icon brkraw

BrkRaw: A comprehensive tool to access raw Bruker Biospin MRI data

bruker2nifti icon bruker2nifti

Medical image format converter: from raw Bruker ParaVision to nifti.

data-setup icon data-setup

Setup instructions for Le Wagon's students on their first day of Data Science Bootcamp

deeplabcut icon deeplabcut

Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans

dke icon dke

The Diffusional Kurtosis Estimator (DKE) is software for processing Diffusional Kurtosis Imaging (DKI) data

dotfiles icon dotfiles

Default configuration for Le Wagon's students

hiddenlayer icon hiddenlayer

Neural network graphs and training metrics for PyTorch, Tensorflow, and Keras.

hyperspectral_image_classification icon hyperspectral_image_classification

A complete solution to utilise both spatial and spectral information in the classification process is provided by the integration of deep CNNs with PCA for feature extraction and dimensionality reduction.

mask_rcnn icon mask_rcnn

Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow

mice_mri_analysis icon mice_mri_analysis

The central task involves applying affine transformations to align these brain images with a standard anatomical space, which is essential for subsequent comparison and analysis.

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