anthonyofseattle Goto Github PK

2021-04-27-usgs-online

April 2021 SWC @ USGS

anthonyofseattle.github.io

Personal website for Anthony Barente

arxiv-style

A Latex style and template for paper preprints (based on NIPS style)

bioconda-recipes

Conda recipes for the bioconda channel.

data-shell

Data for Software Carpentry.

deeppepserver

A RESTful API endpoint to serve models for peptide properties.

ginkgo_challenge

Web application for Ginkgo Bioworks' coding challenge.

glow

Compiler for Neural Network hardware accelerators

mokapot

Fast and flexible semi-supervised learning for peptide detection in Python

ms-retriever

A Snakemake module for retrieving mass spectrometry repositories from PRIDE and MassIVE.

ms-sleuth

A Snakemake module for mass spectrometry database search.

nltk-names

This repository is used for version control workshops using git and github.

openms

The codebase of the OpenMS project

peptidepropertyprediction

Notes on prediciting peptide properties with deep learning models.

phosphopedia

This repository contains the snakemake pipeline for building Phosphopedia

phosphopediamodels

Deep models plugged into DeepPepServer for use on Phosphopedia

phosphopedianotebook

A collection of notebooks analyzing the Phosphopedia's data.

proteoformr

Detecting change points of dynamics within proteins.

pyascore

A python module for fast post translational modification localization, powered by Cython.

pyascorevalidation

Validation experiments for the pyAscore python package.

silacdia