antigenomics Goto Github PK

alisa

[DRAFT] Maximum entropy modeling

antigenomics.github.io

🌐 Immuno Sequencing Algorithms Group web page

arradb

biohack-2018

Data & analysis for biohack-2018 project

bioinf-cov-classifier

Classifying the status of COVID samples and SARS-CoV2-specific TCRs

bootcamp

Pre-employment assessments

cdr3align

Matching CDR3 sequences based on functional similarity

covid19-tcr-analysis

Identification and analysis of TCR motifs specific to SARS-CoV-2 epitopes

gliph

Grouping of Lymphocyte Interactions by Paratope Hotspots

hla-go-ms

HLA ligandome and parent protein Gene Ontology associations

igtools-sandbox

Immunogloblin sequencing data post-analysis - a sandbox for benchmarking dedicated tools and algorithms

ilrfilter

Immunoglobulin-like Read Filter

ipred

Antigen immunogenicity prediction

milib

⚙️ (internal) Milib library

milib_unused

MiLib: yet another Java library for Next Generation Sequencing (NGS) data processing

mir

A tool to handle immunogenomics data: from V/J references to AIRR-seq and TCR:pMHC structures.

mirpy

Python library and snippets for AIRR-seq data analysis, based on our in-house scripts

mist

[DEPRECATED]

public-epitope

📝 [Paper] Exploring the landscape of specific TCR precursor frequencies

pyigmap

A smart wrapper for V(D)J mapping software

repertoire-embedding

Analyzing network structure of the known TCR-cognate epitope map

repseq-annotation-tutorial

📝 [Tutorial] RepSeq data mining basics in R

repseq-protocol-comparison

📝 [Paper] Comparative analysis of immune repertoire profiling protocols

repseqio

Utils for manipulations with RepSeq data. First step: utils to build V/D/J/C references.

segment-parser

A parser for immune receptor gene data, mainly IMGT references

tcr-align-benchmark

Benchmark of TCR alignment and matching methods

tcr-annotation-methodology

📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery

tcr-cdr-loop-model

[DEPRECATED]

tcr-covid-classifier

TCR motifs associated with infectious conditions and HLAs

tcr-dist

Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)