Comments (1)
My first guess is that fsleyes is interpreting the header differently. In the NIFTI standard, the qform and sform can represent a transform to MNI space, but ITK doesn't use these, it looks for NIFTI_XFORM_SCANNER_ANAT
. ITK also requires a rigid transform + voxel scaling transform between voxel and physical coordinates, it doesn't allow a generalized affine transform.
https://github.com/ANTsX/ANTs/wiki/How-does-ANTs-handle-qform-and-sform-in-NIFTI-1-images%3F
You can look at your headers with PrintHeader
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Related Issues (20)
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